WebbPhISCS-BnB: A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem - Farid Rashidi Mehrabadi - HiTSeq - ISMB 2024 WebbBibliographic details on PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
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WebbPhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem Erfan Sadeqi Azer , Farid Rashidi Mehrabadi , Salem Malikic , Xuan Cindy Li , Osnat Bartok , Kevin Litchfield , Ronen Levy , Yardena Samuels , Alejandro A. Schäffer , E. Michael Gertz , Chi-Ping Day , Eva Pérez-Guijarro , Kerrie Marie , Maxwell P. … WebbAbstract Motivation Recent advances in single cell sequencing (SCS) offer an unprecedented insight into tumor emergence and evolution. Principled approaches to tumor phylogeny reconstruction via SCS data are typically based on general computational methods for solving an integer linear program (ILP), or a constraint satisfaction program … aishu cinderella full movie
PhISCS-BnB: A Fast Branch and Bound Algorithm for the Perfect
WebbA Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem - PhISCS-BnB/main.py at master · algo-cancer/PhISCS-BnB Webb7 feb. 2024 · PhISCS-BnB: A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem ... WebbPhISCS-BnB not only o[ff]ers an optimality guarantee, but is also 10 to 100 times faster than the best available methods on simulated tumor SCS data. We also applied PhISCS-BnB on a large melanoma data set derived from the sub-lineages of a cell line involving 24 clones with 3574 mutations, which returned the optimal tumor phylogeny in less than 2 … aishite imasu 1941 full movie