Aramemnon database
Webfrom ARAMEMNON database which has been planned to collect various computational predictions for plant membrane proteins (Eiconda v, TmHMM, TMMOD, MemSAT v, Philius, Phobius, DAS-TM lter, PredTmr-v, Scampi, SosuiGV., THUBUP v, Hmmtop-V, TmPred, andTopPred-v)[].Inparticular,thealignmentofthese VvNHX proteins was drawn with … Web21 lug 2024 · A specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and protein …
Aramemnon database
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WebARAMEMNON is a curated database for Arabidopsis thaliana transmembrane (TM) proteins and transporters. The database compiles topology and signal sequence predictions and … Web24 mag 2005 · ARAMEMNON is a database about transmembrane (TM) proteins and transporters in thale cress (Arabidopsis thaliana), rice (Oryza sativa), as well as …
WebArremon is a genus of neotropical birds in the family Passerellidae.With the exception of the green-striped brushfinch which is endemic to Mexico, all species are found in South … WebAramemnon database. 57 AAT,45NRT1/PTR and 22 OPT unigenes identified by this approach cluster to defined subgroups in the respective phylogenetic trees, among them 25 AAT,8NRT1/PTR and 5 OPT full-length sequences. Besides, 59 unigenes encoding cysteine peptidases were identified and subdivided into different families of the
Web21 giu 2007 · In order to identify AtRTNLB genes in the A. thaliana genome, we blasted the RHD sequence against the TAIR and Aramemnon databases. The search successfully identified 21 genes ( Table 1 ). Fifteen of the 21 gene products are named as AtRTNLB1 to AtRTNLB15 in Aramemnon database. WebThe ARAMEMNON DB enables direct comparison of the predictions of seven different TM span computation programs and the predictions of subcellular localization by eight signal …
Web16 gen 2015 · Mass spectrometry data are included when available. All the proteins of WallProtDB are linked to ProtAnnDB, another database, which contains structural and functional bioinformatics annotations of proteins as well as links to other databases (Aramemnon, CAZy, Planet, Phytozome). A list of references in the cell wall proteomics …
Web31 ott 2024 · Abstract. A large number of proteins in the vacuolar membrane (VM; tonoplast), including transporters and receptors, support the various functions of the vacuole. Molecular analysis of membrane proteins is an essential step in understanding how the vacuole operates but so far only a small number of tonoplast proteins have been … fgyhyyWeb30 ago 2012 · For plants with fully sequenced genomes (e.g. Arabidopsis and rice), the Aramemnon database [ 11, 12] provides annotation and further information for the … hp terbaru berbentuk kotakWeb9 feb 2024 · Full name: Arabidopsis membrane proteins. Description: A specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that … fgyhtrWeb23 set 2008 · Abstract. The GABI Primary Database, GabiPD ( http://www.gabipd.org/ ), was established in the frame of the German initiative for Genome Analysis of the Plant … fgyhukWeb1 set 2024 · Noteworthy, ARAMEMNON , an integrated database for Arabidopsis membrane proteins, compares seven computational algorithms for transmembrane span and eight signal peptide identification alignments to predict the transmembrane features and subcellular localization of the candidate protein [ 39 ]. fgyhyfWeb1 feb 2004 · (PDF) FLAGdb++: A database for the functional analysis of the Arabidopsis genome FLAGdb++: A database for the functional analysis of the Arabidopsis genome Authors: Franck Samson French... hpterbaruberkualitasWebThis protocol describes how to use ARAMEMNON to identify and characterize plant membrane proteins. Keywords: Computational prediction tool; Integral membrane protein; Lipid-anchored membrane protein; Membrane protein database; Plant membrane protein; Plant permeome; Prediction data visualization; Subcellular location. MeSH terms fgyij